^ Stoeck T, Kasper J, Bunge J, Leslin C, Ilyin V, Epstein S (2007)."Diverse molecular data demonstrate that commercially available medicinal leeches are not Hirudo medicinalis". ^ Siddall ME, Trontelj P, Utevsky SY, Nkamany M, Macdonald KS (2007)."Convergent Evolution in the Genetic Basis of Müllerian Mimicry in Heliconius Butterflies". ^ Baxter SW, Papa R, Chamberlain N, Humphray SJ, Joron M, Morrison C, Ffrench-Constant RH, McMillan WO, Jiggins CD (2008)."A Helicobacter pylori TolC Efflux Pump Confers Resistance to Metronidazole". ^ van Amsterdam K, Bart A, van der Ende A (2005)."Identification of Mycobacteria by Matrix-Assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry". ^ Pignone M, Greth KM, Cooper J, Emerson D, Tang J (2006)."3p-Syndrome Defines a Hearing Loss Locus in 3p25.3". ^ McCullough BJ, Adams JC, Shilling DJ, Feeney MP, Sie KCY, Tempel BL (2007)."Genes to Diseases (G2D) Computational Method to Identify Asthma Candidate Genes". ^ Tremblay K, Lemire M, Potvin C, Tremblay A, Hunninghake GM, Raby BA, Hudson TJ, Perez-Iratxeta C, Andrade-Navarro MA, Laprise C (2008)."Equine Multiple Congenital Ocular Anomalies maps to a 4.9 megabase interval on horse chromosome 6". ^ Andersson LS, Juras R, Ramsey DT, Eason-Butler J, Ewart S, Cothran G, Lindgren G (2008)."Direct detection of methylation in genomic DNA". ^ Bart A, van Passel MWJ, van Amsterdam K, van der Ende A (2005)."Microeukaryote Community Patterns along an O2/H2S Gradient in a Supersulfidic Anoxic Fjord (Framvaren, Norway)'Ć". ^ Behnke A, Bunge J, Barger K, Breiner H, Alla V, Stoeck T (2006)."MHC class I characterization of Indonesian cynomolgus macaques". ^ Pendley CJ, Becker EA, Karl JA, Blasky AJ, Wiseman RW, Hughes AL, O'Connor SL, O'Connor DH (2008)."Frequent Intrapatient Recombination between Human Immunodeficiency Virus Type 1 R5 and X4 Envelopes: Implications for Coreceptor Switch'ñø". ^ Mild M, Esbjörnsson J, Fenyö EM, Medstrand P (2007)."Severe anaemia is not associated with HIV-1 env gene characteristics in Malawian children". ^ Calis JC, Rotteveel HP, van der Kuyl AC, Zorgdrager F, Kachala D, van Hensbroek MB, Cornelissen M (2008)."Residual Human Immunodeficiency Virus Type 1 Viremia in Some Patients on Antiretroviral Therapy Is Dominated by a Small Number of Invariant Clones Rarely Found in Circulating CD4+ T Cells'Ć". ^ Bailey JR, Sedaghat AR, Kieffer T, Brennan T, Lee PK, Wind-Rotolo M, Haggerty CM, Kamireddi AR, Liu Y, Lee J, Persaud D, Gallant JE, Cofrancesco J, Quinn TC, Wilke CO, Ray SC, Siliciano JD, Nettles RE, Siliciano RF (2006).Citations cover a wide variety of biomedical research areas, including HIV research, biogeography and environmental biology, DNA methylation studies, genetic diseases, clinical microbiology, and evolution research and phylogenetics. In April 2009, CodonCode Aligner had been cited in more than 400 scientific publications.
#Codoncode aligner ver. 2 full version
The first beta version of CodonCode Aligner was released in April 2003, followed by the first full version in June 2003. Features include chromatogram editing, end clipping, and vector trimming, sequence assembly and contig editing, aligning cDNA against genomic templates, sequence alignment and editing, alignment of contigs to each other with ClustalW, MUSCLE, or built-in algorithms, mutation detection, including detection of heterozygous single-nucleotide polymorphism, analysis of heterozygous insertions and deletions, start online BLAST searches, restriction analysis (find and view restriction cut sites), trace sharpening, and support for Phred, Phrap, ClustalW, and MUSCLE.
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